=> Bootstrap dependency digest>=20010302: found digest-20111104 => Bootstrap dependency fetch-[0-9]*: found fetch-1.7 => Checksum SHA1 OK for R-2.14.0.tar.gz => Checksum RMD160 OK for R-2.14.0.tar.gz ===> Installing dependencies for R-2.14.0 ========================================================================== The following variables will affect the build process of this package, R-2.14.0. Their current value is shown below: * CURSES_DEFAULT = ncurses * JPEG_DEFAULT = jpeg Based on these variables, the following variables have been set: * CURSES_TYPE = ncurses * JPEGBASE (defined, but empty) * JPEG_TYPE = jpeg * TERMCAP_TYPE = curses You may want to abort the process now with CTRL-C and change their value before continuing. Be sure to run `/usr/pkg/bin/bmake clean' after the changes. ========================================================================== => Build dependency libtool-base>=2.2.6bnb3: found libtool-base-2.2.6bnb5 => Build dependency imake-[0-9]*: found imake-1.0.3 => Build dependency imake-[0-9]*: found imake-1.0.3 => Build dependency f2c>=20090411nb2: found f2c-20100903 => Build dependency xcb-proto>=1.4: found xcb-proto-1.6 => Build dependency xproto>=7.0.9: found xproto-7.0.18 => Build dependency kbproto>=1.0.2: found kbproto-1.0.5 => Build dependency renderproto>=0.9.3nb1: found renderproto-0.11 => Build dependency checkperms>=1.1: found checkperms-1.11 => Full dependency perl>=5.0: found perl-5.14.2nb1 => Full dependency unzip-[0-9]*: found unzip-6.0 => Full dependency bzip2>=1.0.5: found bzip2-1.0.6 => Full dependency xz>=5.0.0: found xz-5.0.3 => Full dependency libiconv>=1.9.1nb4: found libiconv-1.14nb2 => Full dependency pcre>=6.2: found pcre-8.13 => Full dependency readline>=6.0: found readline-6.2 => Full dependency zlib>=1.2.3: found zlib-1.2.3 => Full dependency cairo>=1.10.2nb2: found cairo-1.10.2nb2 => Full dependency png>=1.5.0: found png-1.5.6 => Full dependency jpeg>=8nb1: found jpeg-8c => Full dependency tiff>=3.9.2nb1: found tiff-3.9.5 => Full dependency blas>=1.0nb3: found blas-1.1nb2 => Full dependency libXt>=1.0.0: found libXt-1.0.8 => Full dependency tk>=8.4.12nb1: found tk-8.4.18nb2 => Full dependency libf2c>=20090201nb3: found libf2c-20090201nb3 ===> Overriding tools for R-2.14.0 ===> Extracting for R-2.14.0 ===> Patching for R-2.14.0 => Applying pkgsrc patches for R-2.14.0 ===> Creating toolchain wrappers for R-2.14.0 ===> Configuring for R-2.14.0 => Modifying GNU configure scripts to avoid --recheck => Replacing config-guess with pkgsrc versions => Replacing config-sub with pkgsrc versions => Replacing install-sh with pkgsrc version => Checking for portability problems in extracted files configure: WARNING: unrecognized options: --without-gnome, --without-atlas, --without-blas_risc, --without-dxml, --without-libmoto, --with-libiconv-prefix checking build system type... x86_64-unknown-linux-gnu checking host system type... x86_64-unknown-linux-gnu loading site script './config.site' loading build-specific script './config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... yes checking for working aclocal... found checking for working autoconf... found checking for working automake... found checking for working autoheader... found checking for gawk... /usr/bin/awk checking whether ln -s works... yes checking for bison... no checking for byacc... no checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c -o pbulk -g pbulk checking for sed... /bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for /bin/tar... /bin/tar checking for tex... no checking for pdftex... no configure: WARNING: you cannot build PDF versions of the R manuals checking for pdflatex... no configure: WARNING: you cannot build PDF versions of all the help pages checking for makeindex... no checking for /tmp/pkgsrc/math/R/work/.tools/bin/makeinfo... /tmp/pkgsrc/math/R/work/.tools/bin/makeinfo checking whether makeinfo version is at least 4.7... yes checking for install-info... /usr/bin/install-info checking for texi2dvi... /usr/bin/texi2dvi checking for unzip... 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(cached) yes checking for CFPreferencesCopyAppValue... no checking for CFLocaleCopyCurrent... no checking for ptrdiff_t... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for asprintf... yes checking for fwprintf... yes checking for putenv... (cached) yes checking for setenv... yes checking for setlocale... yes checking for snprintf... yes checking for wcslen... yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for shared library run path origin... done checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile.in config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/bzip2/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/pcre/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/extra/xz/Makefile config.status: creating src/extra/zlib/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/modules/vfonts/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tests/Native/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands /bin/rm: cannot remove `libtoolT': No such file or directory config.status: executing po-directories commands config.status: creating po/POTFILES config.status: creating po/Makefile config.status: executing stamp-h commands configure: WARNING: unrecognized options: --without-gnome, --without-atlas, --without-blas_risc, --without-dxml, --without-libmoto, --with-libiconv-prefix R is now configured for x86_64-unknown-linux-gnu Source directory: . Installation directory: /usr/pkg C compiler: gcc -std=gnu99 -O3 -pipe -fstack-protector -Wno-format -fno-builtin -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/ncurses -I/usr/pkg/include/freetype2 Fortran 77 compiler: f77 -O C++ compiler: g++ -O3 -pipe -fstack-protector -Wno-format -fno-builtin -pthread -I/usr/pkg/include -I/usr/include -I/usr/pkg/include/ncurses -I/usr/pkg/include/freetype2 Fortran 90/95 compiler: f77 -g -O2 Obj-C compiler: Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), lzma Additional capabilities: PNG, JPEG, TIFF, NLS Options enabled: shared R library, R profiling Recommended packages: yes configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of all the help pages configure: WARNING: I could not determine a browser configure: WARNING: I could not determine a PDF viewer => Modifying libtool scripts to use pkgsrc libtool